Index

A | B | C | D | E | F | G | I | K | L | M | O | P | R | S | T | U

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A

add() (FunctionSlot.FunctionSlot method) (GAllele.GAlleleList method) (GAllele.GAlleleRange method) (GAllele.GAlleles method) append() (G1DBinaryString.G1DBinaryString method) (G1DList.G1DList method)

apply() (FunctionSlot.FunctionSlot method) applyFunctions() (FunctionSlot.FunctionSlot method) asTuple() (Statistics.Statistics method)

B

bestFitness() (GPopulation.GPopulation method) bestIndividual() (GSimpleGA.GSimpleGA method)

bestRaw() (GPopulation.GPopulation method)

C

CDefCSVFileName (in module Consts) CDefCSVFileStatsGenFreq (in module Consts) CDefESCKey (in module Consts) CDefG1DBinaryStringCrossover (in module Consts) CDefG1DBinaryStringInit (in module Consts) CDefG1DBinaryStringMutator (in module Consts) CDefG1DBinaryStringUniformProb (in module Consts) CDefG1DListMutIntMU (in module Consts) CDefG1DListMutIntSIGMA (in module Consts) CDefG1DListMutRealMU (in module Consts) CDefG1DListMutRealSIGMA (in module Consts) CDefG2DListCrossover (in module Consts) CDefG2DListCrossUniformProb (in module Consts) CDefG2DListInit (in module Consts) CDefG2DListMutator (in module Consts) CDefG2DListMutIntMU (in module Consts) CDefG2DListMutIntSIGMA (in module Consts) CDefG2DListMutRealMU (in module Consts) CDefG2DListMutRealSIGMA (in module Consts) CDefGACrossoverRate (in module Consts) CDefGAGenerations (in module Consts) CDefGAMutationRate (in module Consts) CDefGAPopulationSize (in module Consts) CDefGASelector (in module Consts) CDefLogFile (in module Consts) CDefLogLevel (in module Consts) CDefPopMinimax (in module Consts) CDefPopScale (in module Consts) CDefPopSortType (in module Consts) CDefPythonRequire (in module Consts) CDefRangeMax (in module Consts) CDefRangeMin (in module Consts) CDefScaleLinearMultiplier (in module Consts) CDefScalePowerLawFactor (in module Consts) CDefScaleSigmaTruncMultiplier (in module Consts) CDefSQLiteDBName (in module Consts) CDefSQLiteDBTable (in module Consts) CDefSQLiteDBTablePop (in module Consts) CDefSQLiteStatsCommitFreq (in module Consts) CDefSQLiteStatsGenFreq (in module Consts) CDefTournamentPoolSize (in module Consts) CDefURLPostStatsGenFreq (in module Consts)

clear() (FunctionSlot.FunctionSlot method) (GAllele.GAlleleList method) (GAllele.GAlleleRange method) (GPopulation.GPopulation method) (Statistics.Statistics method) clearList() (G1DList.G1DList method) (G2DList.G2DList method) clearString() (G1DBinaryString.G1DBinaryString method) clone() (G1DBinaryString.G1DBinaryString method) (G1DList.G1DList method) (G2DList.G2DList method) (GPopulation.GPopulation method) (GenomeBase.GenomeBase method) (Statistics.Statistics method) close() (DBAdapters.DBFileCSV method) (DBAdapters.DBSQLite method) (DBAdapters.DBURLPost method) cmp_individual_raw() (in module GPopulation) cmp_individual_scaled() (in module GPopulation) commit() (DBAdapters.DBFileCSV method) (DBAdapters.DBSQLite method) (DBAdapters.DBURLPost method) commitAndClose() (DBAdapters.DBFileCSV method) (DBAdapters.DBSQLite method) (DBAdapters.DBURLPost method) Consts (module) ConvergenceCriteria() (in module GSimpleGA) copy() (G1DBinaryString.G1DBinaryString method) (G1DList.G1DList method) (G2DList.G2DList method) (GPopulation.GPopulation method) (GenomeBase.GenomeBase method) (Statistics.Statistics method) create() (GPopulation.GPopulation method) createStructure() (DBAdapters.DBSQLite method) crossover (G1DBinaryString.G1DBinaryString attribute) (G1DList.G1DList attribute) (G2DList.G2DList attribute) (GenomeBase.GenomeBase attribute) Crossovers (module)

D

DBAdapters (module) DBFileCSV (class in DBAdapters) DBSQLite (class in DBAdapters)

DBURLPost (class in DBAdapters) dumpStatsDB() (GSimpleGA.GSimpleGA method)

E

evaluate() (G1DBinaryString.G1DBinaryString method) (G1DList.G1DList method) (G2DList.G2DList method) (GPopulation.GPopulation method) (GenomeBase.GenomeBase method) Evaluation function

evaluator (G1DBinaryString.G1DBinaryString attribute) (G1DList.G1DList attribute) (G2DList.G2DList attribute) (GenomeBase.GenomeBase attribute) evolve() (GSimpleGA.GSimpleGA method)

F

Fitness score FitnessStatsCriteria() (in module GSimpleGA) FunctionSlot (class in FunctionSlot) (module)

G

G1DBinaryString (class in G1DBinaryString) (module) G1DBinaryStringInitializator() (in module Initializators) G1DBinaryStringMutatorFlip() (in module Mutators) G1DBinaryStringMutatorSwap() (in module Mutators) G1DBinaryStringXSinglePoint() (in module Crossovers) G1DBinaryStringXTwoPoint() (in module Crossovers) G1DBinaryStringXUniform() (in module Crossovers) G1DList (class in G1DList) (module) G1DListCrossoverOX() (in module Crossovers) G1DListCrossoverSinglePoint() (in module Crossovers) G1DListCrossoverTwoPoint() (in module Crossovers) G1DListCrossoverUniform() (in module Crossovers) G1DListInitializatorAllele() (in module Initializators) G1DListInitializatorInteger() (in module Initializators) G1DListInitializatorReal() (in module Initializators) G1DListMutatorAllele() (in module Mutators) G1DListMutatorIntegerBinary() (in module Mutators) G1DListMutatorIntegerGaussian() (in module Mutators) G1DListMutatorIntegerRange() (in module Mutators) G1DListMutatorRealGaussian() (in module Mutators) G1DListMutatorRealRange() (in module Mutators) G1DListMutatorSwap() (in module Mutators) G2DList (class in G2DList) (module) G2DListCrossoverSingleHPoint() (in module Crossovers) G2DListCrossoverSingleVPoint() (in module Crossovers) G2DListCrossoverUniform() (in module Crossovers) G2DListInitializatorAllele() (in module Initializators) G2DListInitializatorInteger() (in module Initializators) G2DListInitializatorReal() (in module Initializators) G2DListMutatorAllele() (in module Mutators) G2DListMutatorIntegerGaussian() (in module Mutators) G2DListMutatorRealGaussian() (in module Mutators) G2DListMutatorSwap() (in module Mutators) GAllele (module) GAlleleList (class in GAllele) GAlleleRange (class in GAllele) GAlleles (class in GAllele) GenomeBase (class in GenomeBase) (module)

getBinary() (G1DBinaryString.G1DBinaryString method) getch() (in module Util) getCurrentGeneration() (GSimpleGA.GSimpleGA method) getCursor() (DBAdapters.DBSQLite method) getDBAdapter() (GSimpleGA.GSimpleGA method) getDecimal() (G1DBinaryString.G1DBinaryString method) getFitnessScore() (G1DBinaryString.G1DBinaryString method) (G1DList.G1DList method) (G2DList.G2DList method) (GenomeBase.GenomeBase method) getFunction() (FunctionSlot.FunctionSlot method) getHeight() (G2DList.G2DList method) getItem() (G2DList.G2DList method) getMinimax() (GSimpleGA.GSimpleGA method) getParam() (G1DBinaryString.G1DBinaryString method) (G1DList.G1DList method) (G2DList.G2DList method) (GenomeBase.GenomeBase method) getPopScores() (in module Interaction) getPopulation() (GSimpleGA.GSimpleGA method) getRandomAllele() (GAllele.GAlleleList method) (GAllele.GAlleleRange method) getRawScore() (G1DBinaryString.G1DBinaryString method) (G1DList.G1DList method) (G2DList.G2DList method) (GenomeBase.GenomeBase method) getReal() (GAllele.GAlleleRange method) getSize() (G2DList.G2DList method) getStatistics() (GPopulation.GPopulation method) (GSimpleGA.GSimpleGA method) getWidth() (G2DList.G2DList method) GPopulation (class in GPopulation) (module) GRankSelector() (in module Selectors) GRouletteWheel() (in module Selectors) GRouletteWheel_PrepareWheel() (in module Selectors) GSimpleGA (class in GSimpleGA) (module) GTournamentSelector() (in module Selectors) GUniformSelector() (in module Selectors)

I

initializator (G1DBinaryString.G1DBinaryString attribute) (G1DList.G1DList attribute) (G2DList.G2DList attribute) (GenomeBase.GenomeBase attribute) Initializators (module) initialize() (G1DBinaryString.G1DBinaryString method) (G1DList.G1DList method) (G2DList.G2DList method) (GPopulation.GPopulation method) (GSimpleGA.GSimpleGA method) (GenomeBase.GenomeBase method)

insert() (DBAdapters.DBFileCSV method) (DBAdapters.DBSQLite method) (DBAdapters.DBURLPost method) Interaction (module) Interactive mode isEmpty() (FunctionSlot.FunctionSlot method) items() (Statistics.Statistics method)

K

kbhit() (in module Util) key_fitness_score() (in module GPopulation)

key_raw_score() (in module GPopulation)

L

LinearScaling() (in module Scaling) list2DSwapElement() (in module Util)

listSwapElement() (in module Util)

M

minimaxType (in module Consts) mutate() (G1DBinaryString.G1DBinaryString method) (G1DList.G1DList method) (G2DList.G2DList method) (GenomeBase.GenomeBase method) mutator (G1DBinaryString.G1DBinaryString attribute) (G1DList.G1DList attribute) (G2DList.G2DList attribute) (GenomeBase.GenomeBase attribute)

Mutators (module)

O

open() (DBAdapters.DBFileCSV method) (DBAdapters.DBSQLite method) (DBAdapters.DBURLPost method)

P

plotHistPopScore() (in module Interaction) plotPopScore() (in module Interaction) PowerLawScaling() (in module Scaling) printStats() (GPopulation.GPopulation method) (GSimpleGA.GSimpleGA method)

printTimeElapsed() (GSimpleGA.GSimpleGA method) pyevolve (module)

R

raiseException() (in module Util) randomFlipCoin() (in module Util) Raw score RawScoreCriteria() (in module GSimpleGA) RawStatsCriteria() (in module GSimpleGA) remove() (GAllele.GAlleleList method) resetStats() (G1DBinaryString.G1DBinaryString method) (G1DList.G1DList method) (G2DList.G2DList method) (GenomeBase.GenomeBase method)

resetStructure() (DBAdapters.DBSQLite method) resetTableIdentify() (DBAdapters.DBSQLite method)

S

Sample genome scale() (GPopulation.GPopulation method) Scaling (module) select() (GSimpleGA.GSimpleGA method) selector (GSimpleGA.GSimpleGA attribute) Selectors (module) set() (FunctionSlot.FunctionSlot method) set_curses_term() (in module Util) set_normal_term() (in module Util) setCrossoverRate() (GSimpleGA.GSimpleGA method) setDBAdapter() (GSimpleGA.GSimpleGA method) setElitism() (GSimpleGA.GSimpleGA method) setGenerations() (GSimpleGA.GSimpleGA method) setItem() (G2DList.G2DList method) setMinimax() (GPopulation.GPopulation method) (GSimpleGA.GSimpleGA method) setMutationRate() (GSimpleGA.GSimpleGA method) setParams() (G1DBinaryString.G1DBinaryString method) (G1DList.G1DList method) (G2DList.G2DList method) (GenomeBase.GenomeBase method)

setPopulationSize() (GPopulation.GPopulation method) (GSimpleGA.GSimpleGA method) setRandomApply() (FunctionSlot.FunctionSlot method) setReal() (GAllele.GAlleleRange method) setSortType() (GPopulation.GPopulation method) (GSimpleGA.GSimpleGA method) SigmaTruncScaling() (in module Scaling) sort() (GPopulation.GPopulation method) sortType (in module Consts) Statistics (class in Statistics) (module) statistics() (GPopulation.GPopulation method) Step callback function step() (GSimpleGA.GSimpleGA method) stepCallback (GSimpleGA.GSimpleGA attribute)

T

terminationCriteria (GSimpleGA.GSimpleGA attribute)

U

Util (module)